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Faculty of Mathematics and Natural SciencesThe Bucher Lab

Navigate through the links by topics:

Statistical analysis in biology
Statistics for Biologists
Points of Significance
Recourses
Statistics in Biology

Practical tools for genomics/proteomics research and other tools (back)Entrez browserBLAST (Sequence Similarity Search)
Tair BLAST (searchable relational Arabidopsis database)
Expressed Sequence Tags database at NCBI
BLAST dbGSS (tp blast search genomic sequences)
Oligodesign
WebCutter
TFSEARCH (Transcription Factor Binding Site Search)
PLACE (plant cis-acting regulatory elements)
Motifs, Patterns and Profile Searches (a list by EMBL Heidelberg)
Primer3
Manipulate a DNA sequence
Translate a DNA sequence
ExPASy Proteomics tools
SOSUI (Prediction of Transmembrane Segments)
PSORT (Prediction of Protein Sorting Signals)
TMPred (Prediction of Transmembrane Segments)
PlantsP (searchable database for plant phosphorylation sites)
PhosPhAT 2.1 (serachable database for Arabidopsis protein phosphorylation sites)
ARAMEMNON (A membrane protein database)
BAR and other Arabidopsis Functional Genomics Tools (University of Toronto)
GENEVESTIGATOR (ETH Zurich)
ClustalW / Jalview alignment (Multiple Sequence Alignment)
Boxshade 3.21 (Shading of Multiple Sequence Alignments)
Phylip Drawtree
Web MicroRNA Designer (WMD at MPI Tübingen)

Genomics Links(back)
The Arabidopsis Book
The Nottingham Arabidopsis Stock Center
The Arabidopsis Information Resource - TAIR (including stock ordering at ABRC)
The TIGR Arabidopsis thaliana Database
Arabidopsis Biological Resource Center (ABRC, Columbus, OH, T-DNA insertion alleles)
The Arabidopsis Gene/ORFeome Collection (Salk Institute, T-DNA insertion alleles)
Arabidopsis sequence tagged inserts at NASC
Salk Institute Genomic Analysis Laboratory (SIGnAL)
AraNet (probabilistic functional gene network)

Other plant species(back)
The Petunia Platform (U Nijmegen)
Tomato Genetics Resource Center (UC Davis)
Genes that Make Tomatoes (Cornell University)
NSF Potato Functional Genomics (at TIGR)
The Solanaceae Genomics Network (SGN)
Lat-Sol Network (at CNIA)
Medicago truncatula gene nomenclature (Clemson University)
Lotus Japonicus Genome Sequencing Project (Kazusa DNA Research Institute)
PopulusDB (Populus tremula x tremuloides genomic sequence database)
The Rice Genome at Science Magazine
Maize Targeted Mutagenesis Database (CSH Laboratory)
Gramene: A Comparative Mapping Resource for Grains
Sequence Platform for the phylogenetic analysis of Plant Genes (SPPG, University of Gent)
Genome Portal (DOE Joint Genome Institute)
LEHLE SEEDS
PLANTS Database (USDA)
http://botit.botany.wisc.edu/courses/systematics/Tree of Life at JGI
Phytozome

Systems Biology Links(back)
Nature OmicsGateway
Metlin database
Lipidmaps
Lipidlibrary
AgriGO
PlantCyc
Maizesequence.org

Microbes Links(back)
American Type Culture Collection (ATCC)
Pathogen Functional Genomics Resource Center (at TIGR)
German National Resource Centre for Biological Material (DSMZ)

Mycorrhiza Links(back)
International Mycorrhiza Society
The International Bank for the Glomeromycota
Mycorrhiza Exchange Literature
http://mycorrhizas.info/info.html

Wiki Links (accept the certificate!)(back)
mPhys1 Wiki
BioIIb Wiki
BioIIIb Wiki

Search engines(back)
ISI Web of SCIENCE
ISI Journal Citation Reports
PubMed
Google Scholar
STKE - Signal Transduction Knowledge Environment
Encyclopedia of Life Sciences

Dictionaries(back)
LEO English/German Dictionary
German/French Dictionary
http://www.spanishdict.com/

Travelling(back)
KVB (Cologne public travel)
Deutsche Bahn
Finaroute (route planning)
routenplaner.web.de
MapQuest (find a map)
Map24.de
Google Maps
Currency converter
http://www.fourmilab.ch/cgi-bin/uncgi/Earth

Free Software(back)
BioEdit (Sequence analysis)
Robin (microarray data preprocessor)
MapMan (visualization software tool)

Links to University of Cologne(back)
Botanical Institute
Biology Department (Fachgruppe Biologie)
Faculty of Mathematics and Natrual Science
Administration
Regional computing center (RRZK)
Electronical paper libary (PubMed)
Interactive Map (interaktive Karte der Uni)
Kölner Studenten Werke (Mensa)
Print A0 poster (only in german)
Eventkalender Life Science (Med. Fakultät und Math.-Nat. Fakultät)
Online Room Reservation

Journals(back)
Cell
Nature
Science
EMBO J
PNAS
Plant Cell
Nature Biotechnol
Nature Methods
Plant Biotechnol J
Plant J
Plant Physiol
New Phytologist
Planta
Plant Mol Biol
Molec Plant-Microbe Interact
Annual Rev Plant Biol
Trends Plant Sci
Curr Opin Plant Biol
ASPB Ethics in Publishing
Current Protocols in Molecular Biology

Open-access Journals(back)
Public Library of Science (PLoS) Biology
Journal of Biology

Lab-/Biosafety(back)
Chemical safety sheets (euSDB)